MuSpAn

A Multiscale Spatial Analysis toolbox

Comprehensive guides for using MuSpAn effectively

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Empowering Spatial Biology

MuSpAn is a multiscale spatial analysis toolbox for analysing spatial data. It provides seamless access to both classical and cutting-edge spatial data analysis approaches, allowing you to pick and choose from the most comprehensive collection of mathematical approaches available.

MuSpAn is being continually expanded, with a team of quantitative researchers constantly developing new methodology to tackle problems in analysing spatial transcriptomics, multiplex immunohistochemistry, imaging mass cytometry and more.

A coloured cell segmentation mask made using MuSpAn
A coloured cell segmentation mask made using MuSpAn

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In-depth user tutorials on MuSpAn features, statistics, visualisation and more

Why MuSpAn?

MuSpAn brings together rigorous quantitative methods and a flexible, modular architecture, giving researchers the freedom to build spatial workflows that match the structure of their data. This makes MuSpAn ideal for both hypothesis generation and creating bespoke question-driven workflows.

Flexible Spatial Analysis

Rather than enforcing a single pipeline, MuSpAn offers a flexible framework that enables users to build bespoke workflows.

Validated and Robust Software

MuSpAn is covered by extensive unit testing, ensuring precision and accuracy of statistics and their implementations.

Mathematical and Statistical Rigour

MuSpAn is a curated toolbox, featuring methods selected by mathematicians and statisticians for their capacity to provide deep insight into spatial data.

Explore Spatial Analysis

Data Visualization

Explore colored points and polygons in your datasets.

Software Tools

Access tools designed for spatial transcriptomics and histology.

User Registration

Sign up to express interest in Muspan software updates.

Partner Links

Visit the Oxford University Innovation site to download Muspan.

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Contact Us

Reach out to us for inquiries, support, or to learn more about our spatial analysis toolbox designed for biologists.

Support

support@muspan.co.uk

Inquiries

info@muspan.co.uk

MuSpAn

Quantitative tools for multiscale spatial data analysis.

Contact us

info@muspan.co.uk

© 2026. All rights reserved.

muspan for commercial use

If you're interested in a commercial license, or in opportunities for MuSpAn consultancy, please email us via info@muspan.co.uk and we can connect you with our colleagues at Oxford University Innovation.